window.onload = loaded;
a = "loaded";

function loaded(){
init();
animate();
THREEx.WindowResize(renderer, camera);
a = "done";
}

(function($) {
    $.fn.goTo = function() {
        $('html, body').animate({
            scrollTop: $(this).offset().top + 'px'
        }, 'slow');
        return this; // for chaining...
    }
})(jQuery);

function scrollToHeader(){
$('h1').goTo();
}

function emails(){
x = document.getElementsByClassName("email");
for (i=0;i<=x.length-1;i++)
{
x[i].href = x[i].href.replace("[please change this to an at symbol]", "@");
}
}

// Based on http://www.openprocessing.org/visuals/?visualID=6910

			var Boid = function() {

				var vector = new THREE.Vector3(),
				_acceleration, _width = 500, _height = 500, _depth = 200, _goal, _neighborhoodRadius = 100,
				_maxSpeed = 4, _maxSteerForce = 0.1, _avoidWalls = false;

				this.position = new THREE.Vector3();
				this.velocity = new THREE.Vector3();
				_acceleration = new THREE.Vector3();

				this.setGoal = function ( target ) {

					_goal = target;

				}

				this.setAvoidWalls = function ( value ) {

					_avoidWalls = value;

				}

				this.setWorldSize = function ( width, height, depth ) {

					_width = width;
					_height = height;vector
					_depth = depth;

				}

				this.run = function ( boids ) {

					if ( _avoidWalls ) {

						vector.set( - _width, this.position.y, this.position.z );
						vector = this.avoid( vector );
						vector.multiplyScalar( 5 );
						_acceleration.addSelf( vector );

						vector.set( _width, this.position.y, this.position.z );
						vector = this.avoid( vector );
						vector.multiplyScalar( 5 );
						_acceleration.addSelf( vector );

						vector.set( this.position.x, - _height, this.position.z );
						vector = this.avoid( vector );
						vector.multiplyScalar( 5 );
						_acceleration.addSelf( vector );

						vector.set( this.position.x, _height, this.position.z );
						vector = this.avoid( vector );
						vector.multiplyScalar( 5 );
						_acceleration.addSelf( vector );

						vector.set( this.position.x, this.position.y, - _depth );
						vector = this.avoid( vector );
						vector.multiplyScalar( 5 );
						_acceleration.addSelf( vector );

						vector.set( this.position.x, this.position.y, _depth );
						vector = this.avoid( vector );
						vector.multiplyScalar( 5 );
						_acceleration.addSelf( vector );

					}/* else {

						this.checkBounds();

					}
					*/

					if ( Math.random() > 0.5 ) {

						this.flock( boids );

					}

					this.move();

				}

				this.flock = function ( boids ) {

					if ( _goal ) {

						_acceleration.addSelf( this.reach( _goal, 0.005 ) );

					}

					_acceleration.addSelf( this.alignment( boids ) );
					_acceleration.addSelf( this.cohesion( boids ) );
					_acceleration.addSelf( this.separation( boids ) );

				}

				this.move = function () {

					this.velocity.addSelf( _acceleration );

					var l = this.velocity.length();

					if ( l > _maxSpeed ) {

						this.velocity.divideScalar( l / _maxSpeed );

					}

					this.position.addSelf( this.velocity );
					_acceleration.set( 0, 0, 0 );

				}

				this.checkBounds = function () {

					if ( this.position.x >   _width ) this.position.x = - _width;
					if ( this.position.x < - _width ) this.position.x =   _width;
					if ( this.position.y >   _height ) this.position.y = - _height;
					if ( this.position.y < - _height ) this.position.y =  _height;
					if ( this.position.z >  _depth ) this.position.z = - _depth;
					if ( this.position.z < - _depth ) this.position.z =  _depth;

				}

				//

				this.avoid = function ( target ) {

					var steer = new THREE.Vector3();

					steer.copy( this.position );
					steer.subSelf( target );

					steer.multiplyScalar( 1 / this.position.distanceToSquared( target ) );

					return steer;

				}

				this.repulse = function ( target ) {

					var distance = this.position.distanceTo( target );

					if ( distance < 150 ) {

						var steer = new THREE.Vector3();

						steer.sub( this.position, target );
						steer.multiplyScalar( 0.5 / distance );

						_acceleration.addSelf( steer );

					}

				}

				this.reach = function ( target, amount ) {

					var steer = new THREE.Vector3();

					steer.sub( target, this.position );
					steer.multiplyScalar( amount );

					return steer;

				}

				this.alignment = function ( boids ) {

					var boid, velSum = new THREE.Vector3(),
					count = 0;

					for ( var i = 0, il = boids.length; i < il; i++ ) {

						if ( Math.random() > 0.6 ) continue;

						boid = boids[ i ];

						distance = boid.position.distanceTo( this.position );

						if ( distance > 0 && distance <= _neighborhoodRadius ) {

							velSum.addSelf( boid.velocity );
							count++;

						}

					}

					if ( count > 0 ) {

						velSum.divideScalar( count );

						var l = velSum.length();

						if ( l > _maxSteerForce ) {

							velSum.divideScalar( l / _maxSteerForce );

						}

					}

					return velSum;

				}

				this.cohesion = function ( boids ) {

					var boid, distance,
					posSum = new THREE.Vector3(),
					steer = new THREE.Vector3(),
					count = 0;

					for ( var i = 0, il = boids.length; i < il; i ++ ) {

						if ( Math.random() > 0.6 ) continue;

						boid = boids[ i ];
						distance = boid.position.distanceTo( this.position );

						if ( distance > 0 && distance <= _neighborhoodRadius ) {

							posSum.addSelf( boid.position );
							count++;

						}

					}

					if ( count > 0 ) {

						posSum.divideScalar( count );

					}

					steer.sub( posSum, this.position );

					var l = steer.length();

					if ( l > _maxSteerForce ) {

						steer.divideScalar( l / _maxSteerForce );

					}

					return steer;

				}

				this.separation = function ( boids ) {

					var boid, distance,
					posSum = new THREE.Vector3(),
					repulse = new THREE.Vector3();

					for ( var i = 0, il = boids.length; i < il; i ++ ) {

						if ( Math.random() > 0.6 ) continue;

						boid = boids[ i ];
						distance = boid.position.distanceTo( this.position );

						if ( distance > 0 && distance <= _neighborhoodRadius ) {

							repulse.sub( this.position, boid.position );
							repulse.normalize();
							repulse.divideScalar( distance );
							posSum.addSelf( repulse );

						}

					}

					return posSum;

				}

			}


			var SCREEN_WIDTH = window.innerWidth,
			SCREEN_HEIGHT = window.innerHeight,
			SCREEN_WIDTH_HALF = SCREEN_WIDTH  / 2,
			SCREEN_HEIGHT_HALF = SCREEN_HEIGHT / 2;

			var camera, scene, renderer,
			birds, bird;

			var boid, boids;



			function init() {

				camera = new THREE.PerspectiveCamera( 75, SCREEN_WIDTH / SCREEN_HEIGHT, 1, 10000 );
				camera.position.z = 450;

				scene = new THREE.Scene();

				birds = [];
				boids = [];

				for ( var i = 0; i < 120; i ++ ) {

					boid = boids[ i ] = new Boid();
					boid.position.x = Math.random() * 400 - 200;
					boid.position.y = Math.random() * 400 - 200;
					boid.position.z = Math.random() * 400 - 200;
					boid.velocity.x = Math.random() * 2 - 1;
					boid.velocity.y = Math.random() * 2 - 1;
					boid.velocity.z = Math.random() * 2 - 1;
					boid.setAvoidWalls( true );
					boid.setWorldSize( 500, 500, 400 );

					bird = birds[ i ] = new THREE.Mesh( new Bird(), new THREE.MeshBasicMaterial( { color:Math.random() * 0x99ffff } ) );
					bird.phase = Math.floor( Math.random() * 62.83 );
					bird.position = boids[ i ].position;
					bird.doubleSided = true;
					// bird.scale.x = bird.scale.y = bird.scale.z = 10;
					scene.add( bird );


				}

				renderer = new THREE.CanvasRenderer();
				// renderer.autoClear = false;
				renderer.setSize( SCREEN_WIDTH, SCREEN_HEIGHT );

				document.addEventListener( 'mousemove', onDocumentMouseMove, false );
				document.getElementById("container").appendChild( renderer.domElement );


			}

			function onDocumentMouseMove( event ) {

				var vector = new THREE.Vector3( event.clientX - SCREEN_WIDTH_HALF, - event.clientY + SCREEN_HEIGHT_HALF, 0 );

				for ( var i = 0, il = boids.length; i < il; i++ ) {

					boid = boids[ i ];

					vector.z = boid.position.z;

					boid.repulse( vector );

				}

			}

			//

			function animate() {

				requestAnimationFrame( animate );

				render();

			}

			function render() {

				for ( var i = 0, il = birds.length; i < il; i++ ) {

					boid = boids[ i ];
					boid.run( boids );

					bird = birds[ i ];

					color = bird.material.color;
					color.g = color.b = 1;
					color.r = 0;
					bird.material.opacity = (500-bird.position.x)/2000;

					bird.rotation.y = Math.atan2( - boid.velocity.z, boid.velocity.x );
					bird.rotation.z = Math.asin( boid.velocity.y / boid.velocity.length() );

					bird.phase = ( bird.phase + ( Math.max( 0, bird.rotation.z ) + 0.1 )  ) % 62.83;
					bird.geometry.vertices[ 5 ].position.y = bird.geometry.vertices[ 4 ].position.y = Math.sin( bird.phase ) * 5;

				}

				renderer.render( scene, camera );

			}